rs6295812 SNP Detail

Summary

• ID
  rs6295812
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATACTG GGATTATAGA
  CATTCTGCTC TCCTTATTAA TTCTTACTAA ATTTTGACAC CTTAAGGAAA AACAAAACAA
  AAGCACTGAG TTTTGCTCTC CATCTTGTAT TAGTACAATT CTGGCCTGCT GAAAAGAGCA
  GTTTACTACC ATTGCTAAAT AAGTGAAGAG AACATGGTAT ATCAAGTCTT CTTAAAATTT
  M
  GTAGAGAAAC CTGTTGATCA CTCTGTTACC CCTCCATATC TAGATTTACA CAGAGTACTA
  GGCATTATAA TATTTATTGA ACTATGAAAT ATTAATCGAG TTTTTTGTGT GTTTGTTTTT
  GTTTTGTTTG TTTGTTTGTT TTGTTTGCTT TTCGGTTTTT GGAGACAGGG TTTCTCTTTA
  CAGCCTTGGC TGTCCTGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8701711	WI_WGS_3_40933755	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6295812					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	754 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575873	regulatory region 575873	1884 bp distal
Rr575874	regulatory region 575874	1157 bp distal
Rr575875	regulatory region 575875	248 bp distal
Rr575876	regulatory region 575876	382 bp distal
Tssr28980	transcription start site region 28980	1991 bp downstream
Tssr28981	transcription start site region 28981	1541 bp downstream
Tssr28982	transcription start site region 28982	1302 bp downstream
Tssr28983	transcription start site region 28983	1121 bp downstream