rs6295825 SNP Detail

Summary

• ID
  rs6295825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGATTA TAGACATTCT
  GCTCTCCTTA TTAATTCTTA CTAAATTTTG ACACCTTAAG GAAAAACAAA ACAAAAGCAC
  TGAGTTTTGC TCTCCATCTT GTATTAGTAC AATTCTGGCC TGCTGAAAAG AGCAGTTTAC
  TACCATTGCT AAATAAGTGA AGAGAACATG GTATATCAAG TCTTCTTAAA ATTTCGTAGA
  R
  AAACCTGTTG ATCACTCTGT TACCCCTCCA TATCTAGATT TACACAGAGT ACTAGGCATT
  ATAATATTTA TTGAACTATG AAATATTAAT CGAGTTTTTT GTGTGTTTGT TTTTGTTTTG
  TTTGTTTGTT TGTTTTGTTT GCTTTTCGGT TTTTGGAGAC AGGGTTTCTC TTTACAGCCT
  TGGCTGTCCT GGAACTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8701724	WI_WGS_3_40933761	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6295825					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	760 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575873	regulatory region 575873	1890 bp distal
Rr575874	regulatory region 575874	1163 bp distal
Rr575875	regulatory region 575875	254 bp distal
Rr575876	regulatory region 575876	388 bp distal
Tssr28980	transcription start site region 28980	1997 bp downstream
Tssr28981	transcription start site region 28981	1547 bp downstream
Tssr28982	transcription start site region 28982	1308 bp downstream
Tssr28983	transcription start site region 28983	1127 bp downstream