rs6296016 SNP Detail

Summary

• ID
  rs6296016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGCTCA CCTTGGGTAC
  ACAACTGAAG ACAATGACTA TCCCTTCCCA GAATCCACCA GTCACTGAGA ACCTTTTCCT
  GTCCGTGGTT AGCTGTTGAT AAGCCCAGTG TTGTGCAATC CCGTGCTGGC AGTCCTCTGT
  GCTGTGATAT CACCTTTTGA CATTCCTGTG CCCAGAAGAT AGCGTTTCCC AGCTCCTCCC
  M
  GTCGTCCCCC CACCCCCACC CCCCAATCTT CCTGCCCTGA ATGCTTTCCG CTTCTCCTTC
  CTGGGTGTTC CCTGGACCTT AGAGAAAACG ATATAAATGT CCTGTCAAAA AACTTAATTA
  AAAATTTTTA AACAAATTTA AGGAAATGAA GCCTCACTGC CGTTGCTGTT GTTGTTTTAA
  TTACACTTTT CTGAAGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss8701915	WI_WGS_3_115977562	WI	MOUSE	f	SNP	C		A
ss45508771	mCV24998097	ABI	CRAMUS_MOUSE	f	SNP		C	A
ss135663626	ENSMUSSNP3591276	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs6296016					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435373 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	128 bp upstream
Rr65099	regulatory region 65099	573 bp distal
Rr367536	regulatory region 367536	605 bp upstream
Rr367537	regulatory region 367537	1004 bp upstream
Tssr35264	transcription start site region 35264	193 bp upstream
Tssr35265	transcription start site region 35265	170 bp upstream