rs6296196 SNP Detail

Summary

• ID
  rs6296196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12739072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCGAA CTCAGAAATC
  CTCCTGGCTC TGCCTCCCGA GTGCTGGGAT TAAAGGCGTG CGCCACCAGT GCCTGGTGGA
  CACAGTTTTG CTAAGGAGCT CCAGAGGATC TGCCCAGTCT CTGTTCTCCA GTGCTGGCTT
  TACAGCCACA TAAAATCATG TTCATCTTCT ACTTGGGGAC TCAAACTCCT GTTAACAGTG
  Y
  AAACAGCTCT GACATACTGA AACATCTTCC CAGACCCTCC CACCTTTTTT TTCTGAAGGG
  TTTCTATACG CTATGAGGCA TACAGTAAGT TTCTTGCTTT TCTTTTTGAG GTATGTATGT
  GTACCCAGAT TCTTACTGGG CTAAGCTTGC CTCTAACTCC CAATCCTTGA ACTTCCAGTG
  TGCTGCCATG TACCATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702095	WI_WGS_19_12292733	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296196					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12739072 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	1952 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	1952 bp downstream
Rr356731	regulatory region 356731	529 bp proximal
Rr359681	regulatory region 359681	1472 bp distal
Rr361368	regulatory region 361368	606 bp proximal