rs6296247 SNP Detail

Summary

• ID
  rs6296247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12739099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ggaactcact
  ctgtagacca ggctggcctc gaactcagaa atcctcctgg ctctgcctcc cgagtgctgg
  gattaaaggc gtgcgccacc agtgcctggT GGACACAGTT TTgctaagga gctccagagg
  atctgcccag tctctgttct ccagtgctgg ctttacagcc acataaaatn atgttcatct
  tctacttggg gactcaaact cctgttaaca gtgnaaacag ctctgacata ctgaaacatc
  Y
  tcccagaccc TCCCACCTTT TTTTTCTGAA GGGTTTCTAT ACGCTATGAG GCATACAGTA
  AGTTTCTTGC TTTTCTTTTT GAGGTATGTA TGTGTACCCA GATTCTTACT GNGCTAAGCT
  TGCCTCTAAC TCCCAATCCT TGAACTTCCA GTGTGCTGCC ATGTACCATC ACTGAGTTTT
  CTGAAAATCC TGTCATCTGT TACACCTGTG AGACACAAAA ACCCTGGGGG GGGGGTGTCA
  TGCACGATGT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702146	WI_WGS_19_12292760	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296247					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12739099 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	1925 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	1925 bp downstream
Rr544490	regulatory region 544490	1753 bp distal
Rr544491	regulatory region 544491	651 bp proximal