rs6296323 SNP Detail

Summary

• ID
  rs6296323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAAGGA AAAACAAAAC
  AAAAGCACTG AGTTTTGCTC TCCATCTTGT ATTAGTACAA TTCTGGCCTG CTGAAAAGAG
  CAGTTTACTA CCATTGCTAA ATAAGTGAAG AGAACATGGT ATATCAAGTC TTCTTAAAAT
  TTCGTAGAGA AACCTGTTGA TCACTCTGTT ACCCCTCCAT ATCTAGATTT ACACAGAGTA
  Y
  TAGGCATTAT AATATTTATT GAACTATGAA ATATTAATCG AGTTTTTTGT GTGTTTGTTT
  TTGTTTTGTT TGTTTGTTTG TTTTGTTTGC TTTTCGGTTT TTGGAGACAG GGTTTCTCTT
  TACAGCCTTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGTCCTCGA ACTCAGAAAT
  CCACCTGCCT CTGCCTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702222	WI_WGS_3_40933813	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296323					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	812 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575873	regulatory region 575873	1942 bp distal
Rr575874	regulatory region 575874	1215 bp distal
Rr575875	regulatory region 575875	306 bp distal
Rr575876	regulatory region 575876	440 bp distal
Tssr28981	transcription start site region 28981	1599 bp downstream
Tssr28982	transcription start site region 28982	1360 bp downstream
Tssr28983	transcription start site region 28983	1179 bp downstream