rs6296483 SNP Detail

Summary

• ID
  rs6296483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121801270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGCTAG TGTCATCTGA
  AAAAAGGGAA CCTCAACAGA GAAAATGTCT CTATGAGATC TTCTTGTCAA GTGTTTTCTT
  GATTAGTGGT TGATGGGGGA GGGCCCAGGC CACAGTGAGC TGCCGGGGTA TTGGATTCTA
  TGAGAAAGAA GGTGGAGCAA GCCATGAGAA GCAAGCCAGG AAGCAGCATC TTCCATGACC
  Y
  CTGCATAAGC TGCTCCTTCC AGGTTCCTGC CCTGACTCCC CTCAGTGATG GACTGTTAGT
  TACGAGGGTA AGCTAGATGA ACCCTTCCCC CCAGTGACCC TAAGACTTGG TCTTCCTTCA
  CTTTTGTCAT TAGCTGTTCC TGGACATCTC ATCTCCCTGT GGCCATCAAA GACAGGACCT
  TTCCTTCCAG CATCCATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702383	WI_WGS_9_123405387	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296483					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121801270 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates
Rr689132	regulatory region 689132	1812 bp distal
Rr689133	regulatory region 689133	1848 bp proximal