rs6296524 SNP Detail

Summary

• ID
  rs6296524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12773036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTCGA GTGGCATTGT
  GCCTCTCGAT TGGCTTATGT TGAGTGAGCT TAGGGTGCTT GGGAGGCAGA AGGAAATAGC
  TCAGGATGGG TCAGTGACTT CAGGCTGTCA TCTAGGAATC CAGCCGAAGC CAGAGTCTAA
  ATGCTTCTTG TTGCTTGTCT GGTCACAGCT TGAAAAACAT GGCCAGAACA GGTTCGGACT
  Y
  TGTTCTGCTC TTTGCCATCT GACAGCATTT GTGCCACCCA GCATGACCCG CGGTTCTACA
  TTCCAGACTT AGCCAGCAGC ACCCTCCTCC TCCTGACTTT TTAAGGCTAG CTCATTCTGA
  GACTCAGACA AATCACTCTA GAACTGTTCA TTACTGTCTT GTCAGTTACC ATTTTTGTCA
  GTTACTATCT ATGCTGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702424	WI_WGS_7_9154816	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296524					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12773036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	306 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	595 bp downstream
Rr642445	regulatory region 642445	1121 bp distal
Rr642446	regulatory region 642446	1443 bp distal
Rr642447	regulatory region 642447	847 bp distal
Rr642448	regulatory region 642448	344 bp distal
Rr642449	regulatory region 642449	657 bp proximal
Tssr64535	transcription start site region 64535	1409 bp downstream
Tssr64536	transcription start site region 64536	1062 bp downstream
Tssr70652	transcription start site region 70652	1442 bp upstream
Tssr70653	transcription start site region 70653	1417 bp upstream
Tssr70654	transcription start site region 70654	1277 bp upstream
Tssr70655	transcription start site region 70655	1158 bp upstream
Tssr70656	transcription start site region 70656	1140 bp upstream
Tssr70657	transcription start site region 70657	802 bp upstream
Tssr70658	transcription start site region 70658	787 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	834 bp upstream