rs6296545 SNP Detail

Summary

• ID
  rs6296545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12773043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGGCAT TGTGCCTCTC
  GATTGGCTTA TGTTGAGTGA GCTTAGGGTG CTTGGGAGGC AGAAGGAAAT AGCTCAGGAT
  GGGTCAGTGA CTTCAGGCTG TCATCTAGGA ATCCAGCCGA AGCCAGAGTC TAAATGCTTC
  TTGTTGCTTG TCTGGTCACA GCTTGAAAAA CATGGCCAGA ACAGGTTCGG ACTCTGTTCT
  K
  CTCTTTGCCA TCTGACAGCA TTTGTGCCAC CCAGCATGAC CCGCGGTTCT ACATTCCAGA
  CTTAGCCAGC AGCACCCTCC TCCTCCTGAC TTTTTAAGGC TAGCTCATTC TGAGACTCAG
  ACAAATCACT CTAGAACTGT TCATTACTGT CTTGTCAGTT ACCATTTTTG TCAGTTACTA
  TCTATGCTGA CTATTTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702445	WI_WGS_7_9154823	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296545					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12773043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	313 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	602 bp downstream
Rr642445	regulatory region 642445	1128 bp distal
Rr642446	regulatory region 642446	1450 bp distal
Rr642447	regulatory region 642447	854 bp distal
Rr642448	regulatory region 642448	351 bp distal
Rr642449	regulatory region 642449	650 bp proximal
Tssr64535	transcription start site region 64535	1416 bp downstream
Tssr64536	transcription start site region 64536	1069 bp downstream
Tssr70652	transcription start site region 70652	1449 bp upstream
Tssr70653	transcription start site region 70653	1424 bp upstream
Tssr70654	transcription start site region 70654	1284 bp upstream
Tssr70655	transcription start site region 70655	1165 bp upstream
Tssr70656	transcription start site region 70656	1147 bp upstream
Tssr70657	transcription start site region 70657	809 bp upstream
Tssr70658	transcription start site region 70658	794 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	841 bp upstream