rs6296548 SNP Detail

Summary

• ID
  rs6296548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115435422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCCACC AGTCACTGAG
  AACCTTTTCC TGTCCGTGGT TAGCTGTTGA TAAGCCCAGT GTTGTGCAAT CCCGTGCTGG
  CAGTCCTCTG TGCTGTGATA TCACCTTTTG ACATTCCTGT GCCCAGAAGA TAGCGTTTCC
  CAGCTCCTCC CAGTCGTCCC CCCACCCCCA CCCCCCAATC TTCCTGCCCT GAATGCTTTC
  Y
  GCTTCTCCTT CCTGGGTGTT CCCTGGACCT TAGAGAAAAC GATATAAATG TCCTGTCAAA
  AAACTTAATT AAAAATTTTT AAACAAATTT AAGGAAATGA AGCCTCACTG CCGTTGCTGT
  TGTTGTTTTA ATTACACTTT TCTGAAGGGA GAATCTTTTA ACTTGTTTTG GCCTGAAGTG
  TGCGGAATAT AATTGCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss8702448	WI_WGS_3_115977611	WI	MOUSE	f	SNP	T			C
ss45505584	mCV24998107	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss135663629	ENSMUSSNP5520614	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs6296548					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115435422 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	177 bp upstream
Rr367536	regulatory region 367536	556 bp upstream
Rr367537	regulatory region 367537	955 bp upstream
Rr583561	regulatory region 583561	234 bp distal
Rr583562	regulatory region 583562	within coordinates
Rr583563	regulatory region 583563	1108 bp proximal
Rr583564	regulatory region 583564	1314 bp proximal
Tssr35264	transcription start site region 35264	242 bp upstream
Tssr35265	transcription start site region 35265	219 bp upstream