rs6296835 SNP Detail

Summary

• ID
  rs6296835
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34690721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCGTGA CTTTCCTAAA
  ACAAAGATAG CTCGCCTATG TGCCTATGTG TGAACAGAGT ACCATACTCT GAGCTCACTA
  ACTTCCCTCA GAACTCAAGA CAGCCTAGAA ACAGAAGTAG TGTGTCTTTA GTGGGAGAGG
  GAAGACAGAC TGGCTTCAAA CAAGCTCCCG CACTAAATGG GAAATGTCTG ACGAGTCTGC
  W
  CCTCTCTGAA CCCTAGTTTA CTCATAGATA GAATGGGAAT AGCAATATCG GAACACAGCT
  GTCTAGAGAA TTTACTAGTG CAAGTAAAAG AAAAACTTGG GTTTTAATTT TGAGACAGGG
  TCTCATGCAG TCCAGGCTTG CCTCCCATCT CACTGTATAC CTGAGGATGG TCTTGAACTC
  CTGATTCTGC TGCCTCCACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702737	WI_WGS_2_35216112	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296835					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34690721 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	944 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	1609 bp upstream
Cpgi11557	CpG island 11557	745 bp distal
Cpgi11558	CpG island 11558	1426 bp proximal
Gm57450	predicted gene, 57450	1569 bp upstream
Gm75753	predicted gene, 75753	408 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	797 bp upstream
Rr373029	regulatory region 373029	678 bp upstream
Rr555526	regulatory region 555526	1102 bp distal
Rr555527	regulatory region 555527	398 bp distal
Rr555528	regulatory region 555528	493 bp proximal
Rr555529	regulatory region 555529	1018 bp proximal
Rr555530	regulatory region 555530	1079 bp proximal
Rr555531	regulatory region 555531	1641 bp proximal
Rr555532	regulatory region 555532	1801 bp proximal
Tssr17430	transcription start site region 17430	1627 bp upstream
Tssr23651	transcription start site region 23651	983 bp upstream
Tssr23652	transcription start site region 23652	883 bp upstream
Tssr23653	transcription start site region 23653	825 bp upstream