rs6296870 SNP Detail

Summary

• ID
  rs6296870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12739211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGCCAC ATAAAATCAT
  GTTCATCTTC TACTTGGGGA CTCAAACTCC TGTTAACAGT GCAAACAGCT CTGACATACT
  GAAACATCTT CCCAGACCCT CCCACCTTTT TTTTCTGAAG GGTTTCTATA CGCTATGAGG
  CATACAGTAA GTTTCTTGCT TTTCTTTTTG AGGTATGTAT GTGTACCCAG ATTCTTACTG
  K
  GCTAAGCTTG CCTCTAACTC CCAATCCTTG AACTTCCAGT GTGCTGCCAT GTACCATCAC
  TGAGTTTTCT GAAAATCCTG TCATCTGTTA CACCTGTGAG ACACAAAAAC CCTGGGGGGG
  GGGTGTCATG CACGATGTAG ACTGCTGGTT ATTCCCCATA ATGAAATTGT AGGTAGCCAT
  GCTGCTCTTT AAACACGAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8702772	WI_WGS_19_12292872	WI	MOUSE	f	SNP							G		T
ss50620964	NES13638053	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		T		G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6296870					SNP	G	G	G	G	G	G	G	T	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50620964	NES13638053	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12739211 () rs orientation: forward

Symbol	Name	Function Class
Cntf	ciliary neurotrophic factor	1813 bp downstream
Gm44505	predicted readthrough transcript (NMD candidate), 44505	1813 bp downstream
Rr356731	regulatory region 356731	390 bp proximal
Rr359681	regulatory region 359681	1611 bp distal
Rr361368	regulatory region 361368	467 bp proximal