rs6296962 SNP Detail

Summary

• ID
  rs6296962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTCTTC TTAAAATTTC
  GTAGAGAAAC CTGTTGATCA CTCTGTTACC CCTCCATATC TAGATTTACA CAGAGTACTA
  GGCATTATAA TATTTATTGA ACTATGAAAT ATTAATCGAG TTTTTTGTGT GTTTGTTTTT
  GTTTTGTTTG TTTGTTTGTT TTGTTTGCTT TTCGGTTTTT GGAGACAGGG TTTCTCTTTA
  Y
  AGCCTTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG TCCTCGAACT CAGAAATCCA
  CCTGCCTCTG CCTCCCGGGT GCTGGGATTA AAGGCATGCG CCACCACCGC CTGGCTCCGA
  GTTTTTATAA ACTCAGTTTT CTAGACTTTA AAACGTTTCA AAGTGAAACT GGAGATTCTT
  TTCCCCCCTC ATGGGGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8702865	WI_WGS_3_40933937	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6296962					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	935 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr575874	regulatory region 575874	1338 bp distal
Rr575875	regulatory region 575875	429 bp distal
Rr575876	regulatory region 575876	563 bp distal
Tssr28981	transcription start site region 28981	1722 bp downstream
Tssr28982	transcription start site region 28982	1483 bp downstream
Tssr28983	transcription start site region 28983	1302 bp downstream