rs6297720 SNP Detail

Summary

• ID
  rs6297720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121801466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCTGCA TAAGCTGCTC
  CTTCCAGGTT CCTGCCCTGA CTCCCCTCAG TGATGGACTG TTAGTTACGA GGGTAAGCTA
  GATGAACCCT TCCCCCCAGT GACCCTAAGA CTTGGTCTTC CTTCACTTTT GTCATTAGCT
  GTTCCTGGAC ATCTCATCTC CCTGTGGCCA TCAAAGACAG GACCTTTCCT TCCAGCATCC
  R
  TCCATGATGG CTTCTCATTG GCTATGGAGG GGCTGTGTGT GATTTCTATG TGGTCATCTT
  GTTACTCTCC TCTACTAACT TCATGATATC CTCCACCCAT ATGCGCATGG GCAGTTGGAC
  AGGGCGCGGA CATGCTGAGG TCAGGGGTTG CCAACTTTTG AAGTTGCATT CCTCAGGTGC
  CTGTTGAATG TATCGGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8703627	WI_WGS_9_123405583	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6297720					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121801466 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates
Rr689133	regulatory region 689133	1652 bp proximal