rs6297839 SNP Detail

Summary

• ID
  rs6297839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:80305400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGTCCCA GGAAATAAAT
  TCGAGAGTGA AGAAGGGGGA AAGACCCTCA GCCCTCAGTC CTTCCAGAAA AGGGGGGGGG
  GGGCTGACAG GAAGAGGGCG GTGTCTGTAA GCTACTAATA CATTACAAAG AAGTCAGTTC
  AAAGCCAAGA GACGCTCTTA AGTTGCTGTT GCAGTAAGAG ACAGGGGCAG GGCCCCAGGT
  Y
  GCCTGTTTAA GGAAGCCCAT TGTGGTGTGT TTTAAATTAC CTCTGCTGGT CTGATGAAGT
  GAGCAAAAGG GCACCGTTTC AGGGCTTAGG ATTCCTGAGT GAGCTAATAC AGGATGCCTT
  TAGCTGGGGG AAAAAAAAAA CCTTCAGCCG GCTCACTAAA CTCCCCCCCT TTTAAGTTTA
  AAAAAGGGAA TGAATGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8703746	WI_WGS_12_74950234	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6297839					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80305400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Actn1	actinin, alpha 1			Intron
				Noncoding-Transcript-Variant
Cpgi4813	CpG island 4813			339 bp proximal
Gm47766	predicted gene, 47766			345 bp upstream
Rr468866	regulatory region 468866			within coordinates
Rr468867	regulatory region 468867			356 bp proximal
Rr468868	regulatory region 468868			1121 bp proximal
Rr468869	regulatory region 468869			1455 bp proximal
Tssr116876	transcription start site region 116876			1516 bp downstream
Tssr116877	transcription start site region 116877			1688 bp downstream
Tssr116878	transcription start site region 116878			1709 bp downstream
Tssr116879	transcription start site region 116879			1730 bp downstream
Tssr116880	transcription start site region 116880			1753 bp downstream
Tssr116881	transcription start site region 116881			1870 bp downstream
Tssr116882	transcription start site region 116882			1894 bp downstream