rs6298078 SNP Detail

Summary

• ID
  rs6298078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34690911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAGTCTGC TCCTCTCTGA
  ACCCTAGTTT ACTCATAGAT AGAATGGGAA TAGCAATATC GGAACACAGC TGTCTAGAGA
  ATTTACTAGT GCAAGTAAAA GAAAAACTTG GGTTTTAATT TTGAGACAGG GTCTCATGCA
  GTCCAGGCTT GCCTCCCATC TCACTGTATA CCTGAGGATG GTCTTGAACT CCTGATTCTG
  Y
  TGCCTCCACC ATACAAATGC TGTGATTTAC AGAAAAGATT TACAATGCTC CCACTCCAAT
  TTATTTATTT AGTTACTTGA AAATATAACC AAAATTCATG GACAAAGTAA AATTGGGCTA
  CAGCTCTCTT CACAACTTTG CCATTATATT TCCAATACCT GAGTCTTTGT GATTGCCTGT
  AATTATCAGA AAGCTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8703987	WI_WGS_2_35216302	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298078					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34690911 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	754 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	1419 bp upstream
Cpgi11557	CpG island 11557	935 bp distal
Cpgi11558	CpG island 11558	1236 bp proximal
Gm57450	predicted gene, 57450	1379 bp upstream
Gm75753	predicted gene, 75753	598 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	987 bp upstream
Rr373029	regulatory region 373029	488 bp upstream
Rr555526	regulatory region 555526	1292 bp distal
Rr555527	regulatory region 555527	588 bp distal
Rr555528	regulatory region 555528	303 bp proximal
Rr555529	regulatory region 555529	828 bp proximal
Rr555530	regulatory region 555530	889 bp proximal
Rr555531	regulatory region 555531	1451 bp proximal
Rr555532	regulatory region 555532	1611 bp proximal
Tssr17430	transcription start site region 17430	1437 bp upstream
Tssr23651	transcription start site region 23651	1173 bp upstream
Tssr23652	transcription start site region 23652	1073 bp upstream
Tssr23653	transcription start site region 23653	1015 bp upstream