rs6298188 SNP Detail

Summary

• ID
  rs6298188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121801490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTCCTG CCCTGACTCC
  CCTCAGTGAT GGACTGTTAG TTACGAGGGT AAGCTAGATG AACCCTTCCC CCCAGTGACC
  CTAAGACTTG GTCTTCCTTC ACTTTTGTCA TTAGCTGTTC CTGGACATCT CATCTCCCTG
  TGGCCATCAA AGACAGGACC TTTCCTTCCA GCATCCATCC ATGATGGCTT CTCATTGGCT
  R
  TGGAGGGGCT GTGTGTGATT TCTATGTGGT CATCTTGTTA CTCTCCTCTA CTAACTTCAT
  GATATCCTCC ACCCATATGC GCATGGGCAG TTGGACAGGG CGCGGACATG CTGAGGTCAG
  GGGTTGCCAA CTTTTGAAGT TGCATTCCTC AGGTGCCTGT TGAATGTATC GGCCTGGAGC
  TGGCCACCTA GGCTTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704099	WI_WGS_9_123405607	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298188					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121801490 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates
Rr689133	regulatory region 689133	1628 bp proximal