rs6298208 SNP Detail

Summary

• ID
  rs6298208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34690984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGAATT TACTAGTGCA
  AGTAAAAGAA AAACTTGGGT TTTAATTTTG AGACAGGGTC TCATGCAGTC CAGGCTTGCC
  TCCCATCTCA CTGTATACCT GAGGATGGTC TTGAACTCCT GATTCTGCTG CCTCCACCAT
  ACAAATGCTG TGATTTACAG AAAAGATTTA CAATGCTCCC ACTCCAATTT ATTTATTTAG
  Y
  TACTTGAAAA TATAACCAAA ATTCATGGAC AAAGTAAAAT TGGGCTACAG CTCTCTTCAC
  AACTTTGCCA TTATATTTCC AATACCTGAG TCTTTGTGAT TGCCTGTAAT TATCAGAAAG
  CTCCCATAGA CTGCCAAAGA ATTTAGAGGT ATGCACTCAC TCTGCTTTCT TTTTTTTTTT
  TTTTTAAGAT TTATTTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704119	WI_WGS_2_35216375	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298208					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34690984 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	681 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	1346 bp upstream
Cpgi11557	CpG island 11557	1008 bp distal
Cpgi11558	CpG island 11558	1163 bp proximal
Gm57450	predicted gene, 57450	1306 bp upstream
Gm75753	predicted gene, 75753	671 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1060 bp upstream
Rr373029	regulatory region 373029	415 bp upstream
Rr555526	regulatory region 555526	1365 bp distal
Rr555527	regulatory region 555527	661 bp distal
Rr555528	regulatory region 555528	230 bp proximal
Rr555529	regulatory region 555529	755 bp proximal
Rr555530	regulatory region 555530	816 bp proximal
Rr555531	regulatory region 555531	1378 bp proximal
Rr555532	regulatory region 555532	1538 bp proximal
Tssr17430	transcription start site region 17430	1364 bp upstream
Tssr23651	transcription start site region 23651	1246 bp upstream
Tssr23652	transcription start site region 23652	1146 bp upstream
Tssr23653	transcription start site region 23653	1088 bp upstream