rs6298224 SNP Detail

Summary

• ID
  rs6298224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121801512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ccatgnccnc
  tgcataagct gctccttcca ggttcctgcc ctgactcccc tcagtgatgg actgttagtt
  acgagggtaa gctagatgaa cccttccccc cAGTGACCCT AAGACTTGGT CTTCCTTCAC
  TTTTGTCATT AGCTGTTCCT GGACATCTCA TCTCCCTGTG GCCATCAAAG ACAGGACCTT
  TCCTTCCAGC ATCCNTCCAT GNTGGCTTCT CATTGGCTNT GGAGGGGCTG TGTGTGATTT
  Y
  TATGTGGTCA TCTTGTTACT CTCCTCTACT AACTTCATGA TATCCTCCAC CCATATGCGC
  ATGGGCAGTT GGACAGGGCG CGGACATGCT GAGGTCAGGG GTTGCCAACT TTTGAAGTTG
  CATTCCTCAG GTGCCTGTTG AATGTATCGG CCTGGAGCTG GCCACCTAGG CTTTCCTGGC
  AGGCAGGTGA TCCTGGAGAT CCAGCCCCTT CCCCGGTATT ACATGAAGAA GCACGCGCCA
  GCGCGCCGAG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704135	WI_WGS_9_123405629	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298224					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121801512 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates
Rr689133	regulatory region 689133	1606 bp proximal