rs6298484 SNP Detail

Summary

• ID
  rs6298484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80305531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTTCA AAGCCAAGAG
  ACGCTCTTAA GTTGCTGTTG CAGTAAGAGA CAGGGGCAGG GCCCCAGGTT GCCTGTTTAA
  GGAAGCCCAT TGTGGTGTGT TTTAAATTAC CTCTGCTGGT CTGATGAAGT GAGCAAAAGG
  GCACCGTTTC AGGGCTTAGG ATTCCTGAGT GAGCTAATAC AGGATGCCTT TAGCTGGGGG
  R
  AAAAAAAAAC CTTCAGCCGG CTCACTAAAC TCCCCCCCTT TTAAGTTTAA AAAAGGGAAT
  GAATGTTACC ATTTTTGGAC ATGAGCATTC TCCCTCAAGC CCAGCCCTAA CCGCACTATC
  CAGAGGGACG CGCCATCCTG TACACCCCCC CCCCCATTCC CAGATCACGA AGTGGGGGGG
  GGGGGACTGA ACGGGAGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704395	WI_WGS_12_74950365	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298484					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80305531 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	within coordinates
Cpgi4813	CpG island 4813	208 bp proximal
Gm47766	predicted gene, 47766	214 bp upstream
Rr468866	regulatory region 468866	within coordinates
Rr468867	regulatory region 468867	225 bp proximal
Rr468868	regulatory region 468868	990 bp proximal
Rr468869	regulatory region 468869	1324 bp proximal
Tssr116876	transcription start site region 116876	1385 bp downstream
Tssr116877	transcription start site region 116877	1557 bp downstream
Tssr116878	transcription start site region 116878	1578 bp downstream
Tssr116879	transcription start site region 116879	1599 bp downstream
Tssr116880	transcription start site region 116880	1622 bp downstream
Tssr116881	transcription start site region 116881	1739 bp downstream
Tssr116882	transcription start site region 116882	1763 bp downstream