rs6298661 SNP Detail

Summary

• ID
  rs6298661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34691010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAGCAATAT
  CGGAACACAG CTGTCTAGAG AATTTACTAG TGCAAGTAAA AGAAAAACTT GGGttttaat
  tttgagacag ggtctcatgc agtccaggct tgcctcccat ctcactgtat acctgaggat
  ggtcttgaac tcctgattct gntgcctcca ccatacaaat gctgtgattt acagAAAAGA
  TTTACAATGC TCCCACTCCA ATTTATTTAT TTAGNTACTT GAAAATATAA CCAAAATTCA
  Y
  GGACAAAGTA AAATTGGGCT ACAGCTCTCT TCACAACTTT GCCATTNTAT TTCCAATACC
  TGAGTCTTTG TGATTGCCTG TAATTATCAG AAAGCTCCCA TAGACTGCCA AAGAATTTAG
  AGGTATGCAC TCACTCTGCT TTCTtttttt ttttttttta agatttattt attatatgta
  agtacactgt agctgtcttc aggcacacca gaagagggtg tcagatctca ttacgggtgg
  ttgtgagcca                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704573	WI_WGS_2_35216401	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298661					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34691010 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	655 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	1320 bp upstream
Cpgi11557	CpG island 11557	1034 bp distal
Cpgi11558	CpG island 11558	1137 bp proximal
Gm57450	predicted gene, 57450	1280 bp upstream
Gm75753	predicted gene, 75753	697 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1086 bp upstream
Rr373029	regulatory region 373029	389 bp upstream
Rr555526	regulatory region 555526	1391 bp distal
Rr555527	regulatory region 555527	687 bp distal
Rr555528	regulatory region 555528	204 bp proximal
Rr555529	regulatory region 555529	729 bp proximal
Rr555530	regulatory region 555530	790 bp proximal
Rr555531	regulatory region 555531	1352 bp proximal
Rr555532	regulatory region 555532	1512 bp proximal
Tssr17430	transcription start site region 17430	1338 bp upstream
Tssr23651	transcription start site region 23651	1272 bp upstream
Tssr23652	transcription start site region 23652	1172 bp upstream
Tssr23653	transcription start site region 23653	1114 bp upstream