rs6298730 SNP Detail

Summary

• ID
  rs6298730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34691057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCCTCC CATCTCACTG
  TATACCTGAG GATGGTCTTG AACTCCTGAT TCTGCTGCCT CCACCATACA AATGCTGTGA
  TTTACAGAAA AGATTTACAA TGCTCCCACT CCAATTTATT TATTTAGTTA CTTGAAAATA
  TAACCAAAAT TCATGGACAA AGTAAAATTG GGCTACAGCT CTCTTCACAA CTTTGCCATT
  R
  TATTTCCAAT ACCTGAGTCT TTGTGATTGC CTGTAATTAT CAGAAAGCTC CCATAGACTG
  CCAAAGAATT TAGAGGTATG CACTCACTCT GCTTTCTTTT TTTTTTTTTT TTAAGATTTA
  TTTATTATAT GTAAGTACAC TGTAGCTGTC TTCAGGCACA CCAGAAGAGG GTGTCAGATC
  TCATTACGGG TGGTTGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8704642	WI_WGS_2_35216448	WI	MOUSE	f	SNP						A		G
ss37394226	NES08754991	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G		A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6298730					SNP	A	A	A	A	A	A	G	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37394226	NES08754991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34691057 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	608 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	1273 bp upstream
Cpgi11557	CpG island 11557	1081 bp distal
Cpgi11558	CpG island 11558	1090 bp proximal
Gm57450	predicted gene, 57450	1233 bp upstream
Gm75753	predicted gene, 75753	744 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1133 bp upstream
Rr373029	regulatory region 373029	342 bp upstream
Rr555526	regulatory region 555526	1438 bp distal
Rr555527	regulatory region 555527	734 bp distal
Rr555528	regulatory region 555528	157 bp proximal
Rr555529	regulatory region 555529	682 bp proximal
Rr555530	regulatory region 555530	743 bp proximal
Rr555531	regulatory region 555531	1305 bp proximal
Rr555532	regulatory region 555532	1465 bp proximal
Tssr17430	transcription start site region 17430	1291 bp upstream
Tssr23651	transcription start site region 23651	1319 bp upstream
Tssr23652	transcription start site region 23652	1219 bp upstream
Tssr23653	transcription start site region 23653	1161 bp upstream