rs6298741 SNP Detail

Summary

• ID
  rs6298741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5642202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATGCAC TCAGTACAAT
  TCTGATTCTT TGTTTTTTGT TTTTTAAATA ATGTGTGTTT TTAAAAAAAC AAAACAAACA
  AAAAAACCTT AGTATCTGGA GTATATTAAA GGAGAACTTG GGAGCAAAAT TGGGTGGAAG
  ACAAAGAAAG CAAACAAATC CCTTTTTAAC AAGTAACCTG ACAGTGTAGA AAACACTGTA
  R
  GAGGAGCTCC AGTTTGCTAC AGTAGGTATG GAATACAGAT AGGGACTGCA GGGATGTGTC
  TAGAGATGCA CCAGTATACC CACCCCATGG TGACCACTAT CTTCTTGTGA TTGGTTTGAA
  ATACAGCCTA CTCTAACTGT AAGGTATGGA CACGATTCTA AGACAGCTTA AAGGGATACA
  AAATACTCAT CAATTTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8704653	WI_WGS_3_5590546	WI	MOUSE	f	SNP			G	A
ss134543013	ENSMUSSNP6014416	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
ss320638404	CHEV_3_5577142	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6298741					SNP	G	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5642202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	378 bp distal
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	1025 bp distal
Rr573199	regulatory region 573199	413 bp distal
Rr573200	regulatory region 573200	748 bp distal
Rr573201	regulatory region 573201	619 bp distal
Tssr28281	transcription start site region 28281	1229 bp downstream
Tssr32526	transcription start site region 32526	1032 bp upstream
Tssr32527	transcription start site region 32527	980 bp upstream
Tssr32528	transcription start site region 32528	959 bp upstream
Tssr32529	transcription start site region 32529	911 bp upstream
Tssr32530	transcription start site region 32530	898 bp upstream