rs6298905 SNP Detail

Summary

• ID
  rs6298905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37929223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TTTCACATGG AAGGAGAATG
  Y
  GTTACCCACA ATTCTTTGCC ATGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss8704817	WI_WGS_3_37760318	WI	MOUSE	f	SNP	C						T
ss46916105	NES10815618	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C		C	T	T		T	T		C
ss134816608	ENSMUSSNP3061202	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss320713689	CHEV_3_37773996	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs6298905					SNP	C	C	C	T	C	C	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46916105	NES10815618	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37929223 () rs orientation: forward

Symbol	Name	Function Class
Rr575579	regulatory region 575579	within coordinates
Rr575580	regulatory region 575580	848 bp proximal
Rr575581	regulatory region 575581	1256 bp proximal