rs6298998 SNP Detail

Summary

• ID
  rs6298998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CGTTTTAAGT
  CATCTGGGGG NGAGGGGAGA CAGAAACTGG TATGTATGTA GGATTCCTTT AAAGGCTAGG
  AACAGACTAA GGGGAAGCTA TTTAAATCGT GTTCTCGTAC CACAATGCAA ACGTTTGAGA
  TCGCTAAGCT CAGCTTTCCC GGAGCCTTGC CGGCTCACAA AGCCATCGAA GACACTATAA
  AGGaaaacaa aacaaaacaa aaaacaaaac aaaaacaaaa caaaCAAACA AACAAAAAAA
  M
  CCCAAACCAA CCATTGCTAG AATAGTTAAG GGAATCCAAA CTTGTTGTAG AGCAAGTGAA
  GTGGAGGCCA GACTAGGTGA CTCAGATGCA TGACTCAAAG CCGACACGGG GCTGGCTGAC
  AGCTCCCGGA GGCGGGGGGC ACCACGTCTG TCACATTTCA GGAAAGTACC AGGCTCGGGA
  GGGCGACAGG AAGCCTCCCC GGCGCGTGCG TGAGTGTGCC GGGGCGGCCT CNGCCCGCCG
  CTCCCCGCCA                                                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8704912	WI_WGS_5_52653344	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6298998					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	83 bp upstream
Tssr46224	transcription start site region 46224	127 bp downstream
Tssr46225	transcription start site region 46225	66 bp upstream
Tssr46226	transcription start site region 46226	535 bp upstream
Tssr46227	transcription start site region 46227	1445 bp upstream
Tssr46228	transcription start site region 46228	1459 bp upstream
Tssr46229	transcription start site region 46229	1528 bp upstream
Tssr46230	transcription start site region 46230	1559 bp upstream
Tssr46231	transcription start site region 46231	1762 bp upstream
Tssr46232	transcription start site region 46232	1779 bp upstream
Tssr46233	transcription start site region 46233	1827 bp upstream
Tssr51023	transcription start site region 51023	360 bp downstream
Tssr51024	transcription start site region 51024	1284 bp downstream
Tssr51025	transcription start site region 51025	1678 bp downstream