rs6299101 SNP Detail

Summary

• ID
  rs6299101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80305660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGAAGCCCA
  TTGTGGTGTG TTTTAAATTA CCTCTGCTGG TCTGATGAAG TGAGCAAAAG GGCACCGTTT
  CAGGGCTTAG GATTCCTGAG TGAGCTAATA CAGGATGCCT TTAGCTGGGG GNAAAAAAAA
  ACCTTCAGCC GGCTCACTAA ACTCCCCCCC TTTTAAGTTT AAAAAAGGGA ATGAATGTTA
  CCATTTTTGG ACATGAGCAT TCTCCCTCAA GCCCAGCCCT AACCGCACTA TCCAGAGGGA
  Y
  GCGCCATCCT GTACACCCCC CCCCCCATTC CCAGATCACG AAGTGGGGGG GGGGGGACTG
  AACGGGAGTT GGGTGTTGGG GGGTCAGGGT ACGTGGCCGC CTAAGGAACG CGCTCTCTGC
  TCAGGCAGGA AGCCGTGACA GGGTTAATGT CTCCCCCTCC CCAAGCAAGA GAGGTTTCTG
  ACCTCTTCCT GCCTATAGCC ATTACGCTCC GGACCCATCG CCAATTTCTC AGCTCAGACG
  GGGCAGCATA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705016	WI_WGS_12_74950494	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299101					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80305660 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	within coordinates
Cpgi4813	CpG island 4813	79 bp proximal
Gm47766	predicted gene, 47766	85 bp upstream
Rr468866	regulatory region 468866	within coordinates
Rr468867	regulatory region 468867	96 bp proximal
Rr468868	regulatory region 468868	861 bp proximal
Rr468869	regulatory region 468869	1195 bp proximal
Tssr116876	transcription start site region 116876	1256 bp downstream
Tssr116877	transcription start site region 116877	1428 bp downstream
Tssr116878	transcription start site region 116878	1449 bp downstream
Tssr116879	transcription start site region 116879	1470 bp downstream
Tssr116880	transcription start site region 116880	1493 bp downstream
Tssr116881	transcription start site region 116881	1610 bp downstream
Tssr116882	transcription start site region 116882	1634 bp downstream