rs6299775 SNP Detail

Summary

• ID
  rs6299775
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47955839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTTATTCAT
  AGTTCAAAAT ATGCTTTGGT CATACAGAGC ACATATATGC ATACATGTCA GATATATATA
  TGGTACTATT TTTATGTGGA CAAACTGTAG TTGGAGAGTC CTGCACAACC AAGGTCACAG
  TAGAACATAA TAGATGTTCA TATGTTAAAT GTTATGAATA TAGTCCTTCT TGAAGATTTG
  ATTTTATTTA ATTTGATTCA CAAATAGATT ACATATATAA CTAATGAAAA TACATAATAT
  S
  CTAGGGGTAA AGGGTAATAT CAGCCTAGAA TTACAGGTTA TTTTACAGTA TTGAATCTCT
  AAAAGGCAAT TATAACATTG TAGGGATACT TAGTTTGATA TTTAAATGCT GCATAGTTAT
  TGCAAAGCTG TTGCTTGTAT CCTGATGTTA GTATAAAAAT AATGCTTGTA ATTAAGTGTC
  ATAAAATCCT TTATAAATAA CTAATTTTAT TACCTATGCC TCACACTGTA TCCTATCATA
  ACAGTATTTT                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705692	WI_WGS_1_48461454	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299775					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47955839 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	843 bp upstream
Rr371240	regulatory region 371240	980 bp downstream
Tssr6618	transcription start site region 6618	758 bp upstream