rs6299946 SNP Detail

Summary

• ID
  rs6299946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58768997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTACTG ACCTCACCTA
  GTTTGCCTAA GCGATGGTTC AGCCAAGAAA AATCTACATT CCTGGTGGTG ACAACAGCTC
  TTCCTGGTAG CTGCCCTACC TCTGAGAGTT TCCTTAGGCT CCTTCATGGT TATAGGAGTA
  TGGGATAGCA ACGTGTTCCT GCATCAAATG TAGAATGAAG AAGAAAATGA AAGCAGGAGT
  Y
  TTTTGGGGAG GGGGGGTGTT CTCTAACCAA CTCCTGCTAC TTAGAAAGGA TTAATTCTGC
  TTATTGTCTT TGTAAAATAA CAATAACAGT TAAGTAATCA AATGTTAATC ATGTGAGCAG
  AATAAAATCC AAGCTTTTGA AATATGTTTT TTTAATGATC CTGGTGGTTG AAGCTGAATG
  AGTTAGAGAG CCCCATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705863	WI_WGS_1_59330004	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6299946					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58768997 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411491	regulatory region 411491	1408 bp distal
Tssr6806	transcription start site region 6806	1212 bp downstream
Tssr6807	transcription start site region 6807	1140 bp downstream
Tssr6808	transcription start site region 6808	1114 bp downstream
Tssr6809	transcription start site region 6809	279 bp downstream