rs6300078 SNP Detail

Summary

• ID
  rs6300078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58769086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCCTAC CTCTGAGAGT
  TTCCTTAGGC TCCTTCATGG TTATAGGAGT ATGGGATAGC AACGTGTTCC TGCATCAAAT
  GTAGAATGAA GAAGAAAATG AAAGCAGGAG TCTTTTGGGG AGGGGGGGTG TTCTCTAACC
  AACTCCTGCT ACTTAGAAAG GATTAATTCT GCTTATTGTC TTTGTAAAAT AACAATAACA
  S
  TTAAGTAATC AAATGTTAAT CATGTGAGCA GAATAAAATC CAAGCTTTTG AAATATGTTT
  TTTTAATGAT CCTGGTGGTT GAAGCTGAAT GAGTTAGAGA GCCCCATTTC TTCACGTAGC
  CTCGCTGTGG GTCAGGATGA CCTGAAACGT CAAGCATCAA TGAAACGCTT TTAGAACTTT
  CAAATGACAT TATGAGAATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8705998	WI_WGS_1_59330093	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300078					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58769086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cflar	CASP8 and FADD-like apoptosis regulator			Intron
				Noncoding-Transcript-Variant
Rr411491	regulatory region 411491			1497 bp distal
Tssr6806	transcription start site region 6806			1301 bp downstream
Tssr6807	transcription start site region 6807			1229 bp downstream
Tssr6808	transcription start site region 6808			1203 bp downstream
Tssr6809	transcription start site region 6809			368 bp downstream