rs6300146 SNP Detail

Summary

• ID
  rs6300146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146372275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTAATG TGGACATCAC
  CTCCCAGGAA TGTACCCCTC TTGGAACACA GCATTGTGCC ATTTGAGGGG GTATTTTTTT
  TCTATTAGTC TATGATAATG CCTGTAGGAT AGGTATTTCT GAAGGAGGGC TGGCTATGTA
  TGGGTTTGAG AAAGTTCACT AGTCTCTCTG ATCTTTAGAA GGTGGTCCAG GTCAGCAAGT
  R
  TTCATCTCAT CCTAAACAAC TGAATGGTTG AGAGAGGACT TTGGTTAAGT GTGTCTAGTG
  ATTTAGTAGG ATCCTACATA CTGACATGTC ACTACATGGC CAGGAAGAGT CCCGAGTTTT
  GAGAGCATCA TTCTTTACAC AATATCCAAT ATGTTCCTGG GCACATTGTT CTGGTCATCA
  TGGTTACTGT CTAGGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706067	WI_WGS_1_147368917	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300146					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146372275 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	Intron
Cpgi840	CpG island 840	828 bp proximal
Cpgi841	CpG island 841	1329 bp proximal
Gm29514	predicted gene 29514	1375 bp upstream
Rr372193	regulatory region 372193	163 bp upstream
Rr420040	regulatory region 420040	1767 bp distal
Rr420041	regulatory region 420041	1597 bp distal
Rr420042	regulatory region 420042	839 bp distal
Rr420043	regulatory region 420043	758 bp proximal
Rr420044	regulatory region 420044	1161 bp proximal
Tssr9214	transcription start site region 9214	931 bp downstream
Tssr9215	transcription start site region 9215	901 bp downstream
Tssr9216	transcription start site region 9216	858 bp downstream
Tssr9217	transcription start site region 9217	844 bp downstream
Tssr9218	transcription start site region 9218	830 bp downstream
Tssr9219	transcription start site region 9219	1134 bp upstream