rs6300521 SNP Detail

Summary

• ID
  rs6300521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58769108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAGGCTC CTTCATGGTT
  ATAGGAGTAT GGGATAGCAA CGTGTTCCTG CATCAAATGT AGAATGAAGA AGAAAATGAA
  AGCAGGAGTC TTTTGGGGAG GGGGGGTGTT CTCTAACCAA CTCCTGCTAC TTAGAAAGGA
  TTAATTCTGC TTATTGTCTT TGTAAAATAA CAATAACAGT TAAGTAATCA AATGTTAATC
  R
  TGTGAGCAGA ATAAAATCCA AGCTTTTGAA ATATGTTTTT TTAATGATCC TGGTGGTTGA
  AGCTGAATGA GTTAGAGAGC CCCATTTCTT CACGTAGCCT CGCTGTGGGT CAGGATGACC
  TGAAACGTCA AGCATCAATG AAACGCTTTT AGAACTTTCA AATGACATTA TGAGAATTTC
  TTTTATCAAT CTTTTCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706442	WI_WGS_1_59330115	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300521					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58769108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cflar	CASP8 and FADD-like apoptosis regulator			Intron
				Noncoding-Transcript-Variant
Rr411491	regulatory region 411491			1519 bp distal
Tssr6806	transcription start site region 6806			1323 bp downstream
Tssr6807	transcription start site region 6807			1251 bp downstream
Tssr6808	transcription start site region 6808			1225 bp downstream
Tssr6809	transcription start site region 6809			390 bp downstream