rs6300592 SNP Detail

Summary

• ID
  rs6300592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58769153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCATCA AATGTAGAAT
  GAAGAAGAAA ATGAAAGCAG GAGTCTTTTG GGGAGGGGGG GTGTTCTCTA ACCAACTCCT
  GCTACTTAGA AAGGATTAAT TCTGCTTATT GTCTTTGTAA AATAACAATA ACAGTTAAGT
  AATCAAATGT TAATCATGTG AGCAGAATAA AATCCAAGCT TTTGAAATAT GTTTTTTTAA
  Y
  GATCCTGGTG GTTGAAGCTG AATGAGTTAG AGAGCCCCAT TTCTTCACGT AGCCTCGCTG
  TGGGTCAGGA TGACCTGAAA CGTCAAGCAT CAATGAAACG CTTTTAGAAC TTTCAAATGA
  CATTATGAGA ATTTCTTTTA TCAATCTTTT CTCTAGCTAC CTTTTCTTTC CAATACCCCC
  ACAACCCCCA CTCTGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706513	WI_WGS_1_59330160	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300592					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58769153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cflar	CASP8 and FADD-like apoptosis regulator			Intron
				Noncoding-Transcript-Variant
Rr411491	regulatory region 411491			1564 bp distal
Tssr6806	transcription start site region 6806			1368 bp downstream
Tssr6807	transcription start site region 6807			1296 bp downstream
Tssr6808	transcription start site region 6808			1270 bp downstream
Tssr6809	transcription start site region 6809			435 bp downstream