rs6300710 SNP Detail

Summary

• ID
  rs6300710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA CGAACACCTG TCGGGGCCCC
  S
  GCTCTGCGCG ATGTAGGGCG CACGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8706632	WI_WGS_5_52653694	WI	MOUSE	f	SNP		G	C
ss45802962	mCV24969835	ABI	CRAMUS_MOUSE	f	SNP	G	G		C
ss321543770	CHEV_5_53980483	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6300710					SNP	G	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	158 bp downstream
Rr611644	regulatory region 611644	521 bp distal
Rr611645	regulatory region 611645	105 bp proximal
Rr611646	regulatory region 611646	480 bp proximal
Rr611647	regulatory region 611647	1247 bp proximal
Rr611648	regulatory region 611648	1748 bp proximal
Tssr46224	transcription start site region 46224	477 bp downstream
Tssr46225	transcription start site region 46225	279 bp downstream
Tssr46226	transcription start site region 46226	185 bp upstream
Tssr46227	transcription start site region 46227	1095 bp upstream
Tssr46228	transcription start site region 46228	1109 bp upstream
Tssr46229	transcription start site region 46229	1178 bp upstream
Tssr46230	transcription start site region 46230	1209 bp upstream
Tssr46231	transcription start site region 46231	1412 bp upstream
Tssr46232	transcription start site region 46232	1429 bp upstream
Tssr46233	transcription start site region 46233	1477 bp upstream
Tssr46234	transcription start site region 46234	1815 bp upstream
Tssr46235	transcription start site region 46235	1989 bp upstream
Tssr51023	transcription start site region 51023	10 bp downstream
Tssr51024	transcription start site region 51024	934 bp downstream
Tssr51025	transcription start site region 51025	1328 bp downstream