rs6300990 SNP Detail

Summary

• ID
  rs6300990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82694953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTGTT GATGGCAAGT
  TGCTCTCATC CTTGCTTTCT GCCAATATCT GCACTTTCTG CATCTATCTG TTTTGGGTGT
  TCTCTTTGTC TCTTCCTCAA ACCTCTCCTG CTATCACCAC CAACAGACAA ACTTCAGGAA
  AAAACAGGCC TCTGTGTAAT AACTGCTTCC ACAAAGCTTA TCAACAAGCA CCAGCTGGGA
  M
  GGCTGGTGTG TGTCCCGGAG TGGAGAATGC ACCATTCAGA AGCATATATA CATATATACA
  TATATATACA TATACACATC TGCCCTTGCT AAGTGCTTTA CAAAAACACC AACAAGGAGG
  AAGACACTTT GCAGAGACAG CAGTGTATAT ACAACAACCT AGACTCCAGC TCTGGGAATG
  TAGGTGTCTT ATGATGGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706912	WI_WGS_15_83599905	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300990					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82694953 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	within coordinates
Tcf20	transcription factor 20	within coordinates