rs6301026 SNP Detail

Summary

• ID
  rs6301026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82694974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCATCC TTGCTTTCTG
  CCAATATCTG CACTTTCTGC ATCTATCTGT TTTGGGTGTT CTCTTTGTCT CTTCCTCAAA
  CCTCTCCTGC TATCACCACC AACAGACAAA CTTCAGGAAA AAACAGGCCT CTGTGTAATA
  ACTGCTTCCA CAAAGCTTAT CAACAAGCAC CAGCTGGGAA GGCTGGTGTG TGTCCCGGAG
  Y
  GGAGAATGCA CCATTCAGAA GCATATATAC ATATATACAT ATATATACAT ATACACATCT
  GCCCTTGCTA AGTGCTTTAC AAAAACACCA ACAAGGAGGA AGACACTTTG CAGAGACAGC
  AGTGTATATA CAACAACCTA GACTCCAGCT CTGGGAATGT AGGTGTCTTA TGATGGTGCT
  AAGGTACCTT AAAATCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706948	WI_WGS_15_83599926	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6301026					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82694974 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	within coordinates
Tcf20	transcription factor 20	within coordinates