rs6301038 SNP Detail

Summary

• ID
  rs6301038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82694980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTGCTT TCTGCCAATA
  TCTGCACTTT CTGCATCTAT CTGTTTTGGG TGTTCTCTTT GTCTCTTCCT CAAACCTCTC
  CTGCTATCAC CACCAACAGA CAAACTTCAG GAAAAAACAG GCCTCTGTGT AATAACTGCT
  TCCACAAAGC TTATCAACAA GCACCAGCTG GGAAGGCTGG TGTGTGTCCC GGAGTGGAGA
  R
  TGCACCATTC AGAAGCATAT ATACATATAT ACATATATAT ACATATACAC ATCTGCCCTT
  GCTAAGTGCT TTACAAAAAC ACCAACAAGG AGGAAGACAC TTTGCAGAGA CAGCAGTGTA
  TATACAACAA CCTAGACTCC AGCTCTGGGA ATGTAGGTGT CTTATGATGG TGCTAAGGTA
  CCTTAAAATC CATCTTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8706960	WI_WGS_15_83599932	WI	MOUSE	f	SNP							A		G
ss48079679	NES12086237	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6301038					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48079679	NES12086237	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82694980 () rs orientation: forward

Symbol	Name	Function Class
Rr506522	regulatory region 506522	within coordinates
Tcf20	transcription factor 20	within coordinates