rs6301148 SNP Detail

Summary

• ID
  rs6301148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58769253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATCATGTG AGCAGAATAA AATCCAAGCT
  TTTGAAATAT GTTTTTTTAA TGATCCTGGT GGTTGAAGCT GAATGAGTTA GAGAGCCCCA
  TTTCTTCACG TAGCCTCGCT GTGGGTCAGG ATGACCTGAA ACGTCAAGCA TCAATGAAAC
  R
  CTTTTAGAAC TTTCAAATGA CATTATGAGA ATTTCTTTTA TCAATCTTTT CTCTAGCTAC
  CTTTTCTTTC CAATACCCCC ACAACCCCCA CTCTGGAAAT CCCTTGTAGC ATTTATTATA
  GTCTCAGTCT TAATTTTTGT AAGAACATTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8707070	WI_WGS_1_59330260	WI	MOUSE	f	SNP	G	A
ss319737737	CHEV_1_58786938	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6301148					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58769253 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411491	regulatory region 411491	1664 bp distal
Tssr6806	transcription start site region 6806	1468 bp downstream
Tssr6807	transcription start site region 6807	1396 bp downstream
Tssr6808	transcription start site region 6808	1370 bp downstream
Tssr6809	transcription start site region 6809	535 bp downstream