rs6301168 SNP Detail

Summary

• ID
  rs6301168
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AACAGCcagg
  gtcatctagc aatcacagta gaagtcagac cattttcacc attcctctaa agcagtgtcc
  tcaactgttc taatgcancg accctttaat acagtgtttc atgtggtggt gagccccanc
  catagtcatt ttcattgtta atactgtaat tttgctactg ttatgaattg taaggtaaat
  atctgatatg caggatgatc ttagGTGAAA CAGATTGAGA ATCTCTGCTC TGAAGCACCA
  S
  TGTAGCATTT AATTGTCACT TATATCCCTT AACCCTCCCA CATCTTCCTC TCAACCTGTC
  AGCCCTAGGC ANCTNCCAGC CTACTTTCTG TTTTCAGAGA TTTCGGGGCA AATTGCTTAA
  CCCATCTCTT TTCTTTTCTA GAAAATGGGT TTGAGAGGAT ACAACACATT AAACACATTC
  AGTTTAATGA ATTTTAATAT ATTTGAAGAG CTGCGTTTCG GTGCGTTTTC CTTACTCTAA
  AACGACAACA                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8707090	WI_WGS_12_79056546	WI	MOUSE	f	SNP							G		C
ss61661752	NES17608488	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6301168					SNP	G	G	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61661752	NES17608488	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			705 bp upstream
Cpgi4867	CpG island 4867			555 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			662 bp upstream
Rr469627	regulatory region 469627			1805 bp distal
Rr469628	regulatory region 469628			258 bp proximal
Rr469629	regulatory region 469629			342 bp proximal
Rr469630	regulatory region 469630			760 bp proximal
Tssr114338	transcription start site region 114338			585 bp upstream
Tssr114339	transcription start site region 114339			950 bp upstream
Tssr114340	transcription start site region 114340			978 bp upstream
Tssr116998	transcription start site region 116998			731 bp downstream
Tssr116999	transcription start site region 116999			751 bp downstream