rs6301198 SNP Detail

Summary

• ID
  rs6301198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58769283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTAAGT AATCAAATGT
  TAATCATGTG AGCAGAATAA AATCCAAGCT TTTGAAATAT GTTTTTTTAA TGATCCTGGT
  GGTTGAAGCT GAATGAGTTA GAGAGCCCCA TTTCTTCACG TAGCCTCGCT GTGGGTCAGG
  ATGACCTGAA ACGTCAAGCA TCAATGAAAC GCTTTTAGAA CTTTCAAATG ACATTATGAG
  R
  ATTTCTTTTA TCAATCTTTT CTCTAGCTAC CTTTTCTTTC CAATACCCCC ACAACCCCCA
  CTCTGGAAAT CCCTTGTAGC ATTTATTATA GTCTCAGTCT TAATTTTTGT AAGAACATTA
  TCTCAGGAAG AGTTCATTCT TAGGCCTGAT CATTCCTGAC GCCATGTTGA TATGAAACAG
  TCCTTTTATC TATCTGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8707120	WI_WGS_1_59330290	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6301198					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58769283 () rs orientation: forward

Symbol	Name	Function Class
Cflar	CASP8 and FADD-like apoptosis regulator	within coordinates
Rr411491	regulatory region 411491	1694 bp distal
Tssr6806	transcription start site region 6806	1498 bp downstream
Tssr6807	transcription start site region 6807	1426 bp downstream
Tssr6808	transcription start site region 6808	1400 bp downstream
Tssr6809	transcription start site region 6809	565 bp downstream