rs6301372 SNP Detail

Summary

• ID
  rs6301372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148518945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGAACAG TAAACATGGC
  CCCTTAGGAA GAGACACAGG GAAGAAGAGT GGAAGAAACA GTTTCTGAGC TTTAAATATC
  ACACATTGTC CCCCAAGGGT GAACTTGATA CAAATGCCCT GGAATCAAAA GAATTAAATT
  TGTTAAACTC TACCCTAATT TTCCAAAATT GCAAAAACAA TGATGTTGAC CTCCAGGTTC
  Y
  TGATTTCCTG CCACTCTGGG GATGTATGAA TATGAATTAA CACGGTTCTC AGAGCTTTGC
  TCAATATCCA TTCCACAATC CACTCTAATT TCTCTCTTGC TAGCATCCTC CAATTCAACC
  TTCTGCTCTC CCCCAGGTTC TTGTCCCCTA CACCCTACCC TGTCAAGGTT CCCTCTCCCT
  CACCCCCTCC CCCATCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8707295	WI_WGS_2_149712891	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6301372					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148518945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12400	CpG island 12400	734 bp proximal
Gm75182	predicted gene, 75182	within coordinates
Nxt1	NTF2-related export protein 1	999 bp downstream
Rr566948	regulatory region 566948	589 bp proximal
Rr566949	regulatory region 566949	972 bp proximal
Rr566950	regulatory region 566950	1964 bp proximal