rs6301472 SNP Detail

Summary

• ID
  rs6301472
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75455610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGAGGG AAAAGCTCCT
  GGCAACTAAT GGCTTCTCAG AGGGGAGAAG TGGAAAGAAG CCGAATGTAA TGAGCAAAAA
  AAAAATCATG ATGGGCCTTG GTAATGACCT CAGGGCCTTA GGAGGAGAAG ACCTTAAGCT
  TTGTTTAATC TAATGATAGT TCCCTAACTT TTTTATTTGT TTGTTTTGGT TTTGGTTTTG
  K
  TTTTTTTCTT TTTTGAGACT GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA ACTCACTCTG
  TAGACCAGGC TGGCCTCGAA CTCACAGAGA TCTGCCTGCT TCTGCTTCTC GAGAGGTTGC
  AGGATCAAAG TTGTACACCA CCACTGCCTG GCTATAATTT CCTAACTTTA TACCCCTGGA
  ACAATTTTTT TTTTTTTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8707395	WI_WGS_11_76182771	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6301472					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75455610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			890 bp distal
Rr451208	regulatory region 451208			98 bp distal
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			1118 bp downstream