rs6301554 SNP Detail

Summary

• ID
  rs6301554
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99511243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGCAAC GTTTATTCCT
  AGGGCTTTTG TCCTTGCTGT CCCCAAGATG CAGAGCTTGG CATTTTGAAG CTGTGTTGAG
  AGAAAGGCCC TAAGATACAA CAAACCCTCC CAGAACTTAA AGTCACGAGA TGAGAGTCCC
  AACGAGAGGG GGCAGGGATC TATAATCAGG AGAGAAAATA TAATACCCCC AACTCCTGCC
  S
  GAGCTTTCTG GGCAACGTTA ATGGATAAGG GATCTGAAAG GTGATTGCCA TCTGATCAAA
  TTGGAGCACA CCTATGGGTC TCCTAATGTG GCTCAGGTCA AATTCCTTTA ATTTTGCGGG
  CTTGCCAACA GTCGCTGCAT CCTGCCATGT GAAGTGAAGG GATGGTGACA GAGTCTGTCC
  TGCCGCTCAT CAAGGCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8707478	WI_WGS_9_100154783	WI	MOUSE	f	SNP			G	C
ss136849330	ENSMUSSNP562875	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6301554					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99511243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	359 bp proximal
Dzip1l	DAZ interacting protein 1-like	306 bp upstream
Gm68333	predicted gene, 68333	within coordinates
Rr206941	regulatory region 206941	within coordinates
Tssr86687	transcription start site region 86687	341 bp upstream
Tssr86688	transcription start site region 86688	633 bp upstream
Tssr86689	transcription start site region 86689	665 bp upstream