rs6301606 SNP Detail

Summary

• ID
  rs6301606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86762735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCG GAGGGGCGCC GCGGCTCTAT
  R
  GCTTGCGTTC TTGCGCGCGC CCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8707532	WI_WGS_9_87825378	WI	MOUSE	f	SNP		G	A
ss46374626	mCV24288061	ABI	CRAMUS_MOUSE	f	SNP	A	G		A
ss136762472	ENSMUSSNP4207875	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6301606					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86762735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	279 bp distal
Rr684154	regulatory region 684154	within coordinates
Snap91	synaptosomal-associated protein 91	28 bp upstream
Tssr90794	transcription start site region 90794	310 bp upstream
Tssr90795	transcription start site region 90795	270 bp upstream
Tssr90796	transcription start site region 90796	215 bp upstream
Tssr90797	transcription start site region 90797	198 bp upstream
Tssr90798	transcription start site region 90798	180 bp upstream
Tssr90799	transcription start site region 90799	23 bp upstream
Tssr90800	transcription start site region 90800	16 bp downstream