rs6301720 SNP Detail

Summary

• ID
  rs6301720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         aactgttcta
  atgcancgac cctttaatac agtgtttcat gtggtggtga gccccancca tagtcatttt
  cattgttaat actgtaattt tgctactgtt atgaattgta aggtaaatat ctgatatgca
  ggatgatctT AGGTGAAACA GATTGAGAAT CTCTGCTCTG AAGCACCANT GTAGCATTTA
  ATTGTCACTT ATATCCCTTA ACCCTCCCAC ATCTTCCTCT CAACCTGTCA GCCCTAGGCA
  R
  CTNCCAGCCT ACTTTCTGTT TTCAGAGATT TCGGGGCAAA TTGCTTAACC CATCTCTTTT
  CTTTTCTAGA AAATGGGTTT GAGAGGATAC AACACATTAA ACACATTCAG TTTAATGAAT
  TTTAATATAT TTGAAGAGCT GCGTTTCGGT GCGTTTTCCT TACTCTAAAA CGACAACAAA
  AACCTTGGAA GCTTTTAGAA GTCTCTCCTC ACCTCCTCAG CCCTTTTAGA AGTCTCTCCC
  TGTTTCTCCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8707646	WI_WGS_12_79056618	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6301720					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			633 bp upstream
Cpgi4867	CpG island 4867			483 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			590 bp upstream
Rr469627	regulatory region 469627			1877 bp distal
Rr469628	regulatory region 469628			186 bp proximal
Rr469629	regulatory region 469629			270 bp proximal
Rr469630	regulatory region 469630			688 bp proximal
Tssr114338	transcription start site region 114338			513 bp upstream
Tssr114339	transcription start site region 114339			878 bp upstream
Tssr114340	transcription start site region 114340			906 bp upstream
Tssr116998	transcription start site region 116998			659 bp downstream
Tssr116999	transcription start site region 116999			679 bp downstream