rs6301732 SNP Detail

Summary

• ID
  rs6301732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCATAG TCATTTTCAT
  TGTTAATACT GTAATTTTGC TACTGTTATG AATTGTAAGG TAAATATCTG ATATGCAGGA
  TGATCTTAGG TGAAACAGAT TGAGAATCTC TGCTCTGAAG CACCAGTGTA GCATTTAATT
  GTCACTTATA TCCCTTAACC CTCCCACATC TTCCTCTCAA CCTGTCAGCC CTAGGCAACT
  R
  CCAGCCTACT TTCTGTTTTC AGAGATTTCG GGGCAAATTG CTTAACCCAT CTCTTTTCTT
  TTCTAGAAAA TGGGTTTGAG AGGATACAAC ACATTAAACA CATTCAGTTT AATGAATTTT
  AATATATTTG AAGAGCTGCG TTTCGGTGCG TTTTCCTTAC TCTAAAACGA CAACAAAAAC
  CTTGGAAGCT TTTAGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8707658	WI_WGS_12_79056621	WI	MOUSE	f	SNP							A		G
ss61661751	NES17608489	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6301732					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61661751	NES17608489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407900 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			630 bp upstream
Cpgi4867	CpG island 4867			480 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			587 bp upstream
Rr469627	regulatory region 469627			1880 bp distal
Rr469628	regulatory region 469628			183 bp proximal
Rr469629	regulatory region 469629			267 bp proximal
Rr469630	regulatory region 469630			685 bp proximal
Tssr114338	transcription start site region 114338			510 bp upstream
Tssr114339	transcription start site region 114339			875 bp upstream
Tssr114340	transcription start site region 114340			903 bp upstream
Tssr116998	transcription start site region 116998			656 bp downstream
Tssr116999	transcription start site region 116999			676 bp downstream