rs6302098 SNP Detail

Summary

• ID
  rs6302098
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTCAGA TTCATAATCG
  TTCACTCTAC TTTATAACTA ACTGTGTGCG TACACACAAC TATTTCTTTT TCTCTTTGCA
  GGTGCTGCAA ACCAGGAAGG GGAAGTGTGT GGTTTAAGTT GCATATCCCT TATCCTCTGG
  CTGCTGGAGG CTTGCTGAAG GCTGTATGCT GTTAATGCTA ATTGTGATAG GGGTTTTGGC
  S
  TCTGACTGAC TCCTACCTGT TAGCATTAAC AGGACACAAG GCCTGTTACT AGCACTCACA
  TGGAACAAAT GGCCACCGTG GGAGGATGAC AAGTCCAAGA GTCACCCTGC TGGATGAACG
  TAGATGTCAG ACTCTATCAT TTAATGTGCT AGTCATAACC TGGTTACTAG GATAGTCCAC
  TGTAAGTGTT ACGATAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8708025	WI_WGS_16_85339203	WI	MOUSE	f	SNP	C	G
ss325261451	CHEV_16_84714417	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6302098					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511060 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	within coordinates
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	837 bp downstream
Rr518521	regulatory region 518521	525 bp distal
Rr518522	regulatory region 518522	within coordinates
Tssr139173	transcription start site region 139173	30 bp upstream
Tssr139174	transcription start site region 139174	813 bp upstream
Tssr139175	transcription start site region 139175	901 bp upstream
Tssr139176	transcription start site region 139176	1437 bp upstream