rs6302225 SNP Detail

Summary

• ID
  rs6302225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGGTGC TGCAAACCAG
  GAAGGGGAAG TGTGTGGTTT AAGTTGCATA TCCCTTATCC TCTGGCTGCT GGAGGCTTGC
  TGAAGGCTGT ATGCTGTTAA TGCTAATTGT GATAGGGGTT TTGGCCTCTG ACTGACTCCT
  ACCTGTTAGC ATTAACAGGA CACAAGGCCT GTTACTAGCA CTCACATGGA ACAAATGGCC
  R
  CCGTGGGAGG ATGACAAGTC CAAGAGTCAC CCTGCTGGAT GAACGTAGAT GTCAGACTCT
  ATCATTTAAT GTGCTAGTCA TAACCTGGTT ACTAGGATAG TCCACTGTAA GTGTTACGAT
  AAATGTCATT TAAAAGATAG ATCAGCAGTA TCCTAAACAA CATCTCAACT TCAAGCCCAC
  ATGTTTATTT TTTATCTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8708152	WI_WGS_16_85339278	WI	MOUSE	f	SNP						A		G
ss60500111	NES16522456	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G		A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6302225					SNP	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500111	NES16522456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511135 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	43 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	912 bp downstream
Rr518521	regulatory region 518521	600 bp distal
Rr518522	regulatory region 518522	within coordinates
Rr518523	regulatory region 518523	1927 bp proximal
Tssr139173	transcription start site region 139173	41 bp downstream
Tssr139174	transcription start site region 139174	738 bp upstream
Tssr139175	transcription start site region 139175	826 bp upstream
Tssr139176	transcription start site region 139176	1362 bp upstream