rs6302642 SNP Detail

Summary

• ID
  rs6302642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86762934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCGGGCGACG
  GCGGAGGAGG GGGTGGGACC GGAGGGGCGC CGCGGCTCTA TNGCTTGCGT TCTTGCGCGC
  GCCCTGCGTC CCCGCGCGCA CCCGCTGCGT CCCCGGGCGG ACCTGGTGCG CGCGCGCCGC
  GCATACCTGC CGGGCAACTG CAGGATGCTC GGGGATCGCC GCGGGCGTGG GCCTGGGGAG
  AGGGAGGGCT GTGAAGGCCG AGGCAAGGGC GGCAGCGTGC GCTGCCAACA GAGCCCAGCC
  Y
  CTTCTCCTAA GAAGCGTGCC TGTGACTAGC TGGCCTGTCC TCGGCAGTAG AGGCCCAGAT
  GGGCAGGGCG ATTTGAAATG TCAGATTCTG TGGCCACGCG ACCGTTACCT GTGCACCCTC
  AGCTCCTTGA GGCTGCTCCA CTNGTCTCAG TTACAACGGG GAGCCGAGTG GGCAGGTAAT
  TCGAGCCGCT TTAGCCTTAA AGCAATACTG AGGTATGCGG TATAGACAAG TAGCAAAGCA
  ATTAGCTGAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8708572	WI_WGS_9_87825577	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6302642					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86762934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	478 bp distal
Rr684154	regulatory region 684154	within coordinates
Snap91	synaptosomal-associated protein 91	227 bp upstream
Tssr90794	transcription start site region 90794	509 bp upstream
Tssr90795	transcription start site region 90795	469 bp upstream
Tssr90796	transcription start site region 90796	414 bp upstream
Tssr90797	transcription start site region 90797	397 bp upstream
Tssr90798	transcription start site region 90798	379 bp upstream
Tssr90799	transcription start site region 90799	222 bp upstream
Tssr90800	transcription start site region 90800	169 bp upstream