rs6302689 SNP Detail

Summary

• ID
  rs6302689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTGCTG AAGGCTGTAT
  GCTGTTAATG CTAATTGTGA TAGGGGTTTT GGCCTCTGAC TGACTCCTAC CTGTTAGCAT
  TAACAGGACA CAAGGCCTGT TACTAGCACT CACATGGAAC AAATGGCCAC CGTGGGAGGA
  TGACAAGTCC AAGAGTCACC CTGCTGGATG AACGTAGATG TCAGACTCTA TCATTTAATG
  Y
  GCTAGTCATA ACCTGGTTAC TAGGATAGTC CACTGTAAGT GTTACGATAA ATGTCATTTA
  AAAGATAGAT CAGCAGTATC CTAAACAACA TCTCAACTTC AAGCCCACAT GTTTATTTTT
  TATCTTGAAT GGAAAGTGAA ACTTGTATCA TTTTTATTTC AAAATTATGT TCATAACCAT
  CTTCAATGAT TCAACCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss8708619	WI_WGS_16_85339350	WI	MOUSE	f	SNP		T		C
ss60500109	NES16522458	PERLEGEN	MM_PANEL2	f	SNP	T		C		T	T	C		C	C
ss325261454	CHEV_16_84714564	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs6302689					SNP	T	T	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500109	NES16522458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511207 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	115 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	984 bp downstream
Rr518521	regulatory region 518521	672 bp distal
Rr518522	regulatory region 518522	within coordinates
Rr518523	regulatory region 518523	1855 bp proximal
Tssr139173	transcription start site region 139173	113 bp downstream
Tssr139174	transcription start site region 139174	666 bp upstream
Tssr139175	transcription start site region 139175	754 bp upstream
Tssr139176	transcription start site region 139176	1290 bp upstream