rs6302797 SNP Detail

Summary

• ID
  rs6302797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6974014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTACAG GTCTTGATCA
  TGAACGCCCC TGGAGGAAGG AGGAAGGAAG GTAGAAGGAC TCATAGACCC CGGGAACAGG
  TGCGCACCTT TCCAGCCTTA CCCACAACGC TAGGACATGG GAGAGACCCT CTGAGCCTTA
  GCTTCTTGGT GGGGTAGACT GCAGCACCAT GGGCGCTGTT CTAGCCTGCC TTAGCAGTAG
  K
  ACATCCAGGG CTGGCTACTG AAACTCAGAT CATCACTGGA CTCTTTCAGG ACCGAAATGT
  GCAGCTGTCT AAGGCTCTGT CCTATGCCCT TCGCCACGGG GCCTTGAAGC TGGGACTTCC
  CATGCGAGCT GGTAAGTAAC CATGCTGGAA CTGGGAGGAA TGGTGGGAGC CCAGAGAGCA
  ACTGGAACCT CTGTCTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8708727	WI_WGS_19_3182633	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6302797					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6974014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10541	CpG island 10541	280 bp distal
Nudt22	nudix hydrolase 22	543 bp upstream
Rr543531	regulatory region 543531	464 bp distal
Trpt1	tRNA phosphotransferase 1	within coordinates
Tssr154719	transcription start site region 154719	510 bp downstream
Tssr154720	transcription start site region 154720	439 bp downstream
Tssr154721	transcription start site region 154721	414 bp downstream
Tssr157919	transcription start site region 157919	550 bp upstream